What’s on the agenda of BYOD#3?

What’s on the agenda of the HEAP BYOD#3?

To prepare for the workshop, attendees have uploaded data and analysis pipelines to the Hopsworks informatics platform. The data sources are:

• Cervical Cancer Screening Cohort (Karolinska Institute)
• Finnish Maternity Cohort (University of Oulu)
• HPV Vaccination Cohort (Tampere University Hospital)
• Consumer cohort (Statens Serum Institute)
• Wearable Data Collection Study (Karolinska Institute)
• Lifestyle cohort (University of Innsbruck)
• Machine Learning for metagenomics (ICM, University of Warsaw)

The aims for the first three days of the BYOD are to:

• Design and implement common metadata for querying the datasets in Hopsworks.
• Define the analysis tools installed in the platform: source code, resources, dependencies, repositories, and documentation
• Finally, to install the selected tools and implement the chosen pipelines 

Day 4 will focus on a presentation of the results, communications planning for the year ahead, and discussions about the sustainability of the HEAP platform.